Overview

• Single Cell Tools

API References

• sctools package
  • Submodules
    • sctools.bam module
      • Tools for Manipulating SAM/BAM format files
    • sctools.barcode module
      • Nucleotide Barcode Manipulation Tools
    • sctools.encodings module
      • Compressed Barcode Encoding Methods
    • sctools.fastq module
      • Efficient Fastq Iterators and Representations
    • sctools.gtf module
      • GTF Records and Iterators
    • sctools.platform module
      • Command Line Interface for SC Tools:
    • sctools.reader module
      • Sequence File Iterators
    • sctools.stats module
      • Statistics Functions for Sequence Data Analysis
• sctools.metrics package
  • Submodules
    • sctools.metrics.aggregator module
      • Sequence Metric Aggregators
    • sctools.metrics.gatherer module
      • Sequence Metric Gatherers
    • sctools.metrics.merge module
      • Merge Sequence Metrics
    • sctools.metrics.writer module
      • Metric Writers
• sctools.test package
  • Submodules
    • sctools.test.test_bam module
    • sctools.test.test_barcode module
    • sctools.test.test_encodings module
    • sctools.test.test_entrypoints module
    • sctools.test.test_fastq module
    • sctools.test.test_gtf module
    • sctools.test.test_metrics module
    • sctools.test.test_stats module

Indices and tables

• Index

• Module Index

• Search Page